13647 (TMS1) PTZ00164
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13647 chr_7 (TMS1) PTZ00164 840674 842572 + PTZ00164

Synonyms

NCBI ID Ensembl Genomes exon ID
7444096 Thaps13647.1, Thaps13647.4, Thaps13647.3, Thaps13647.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0076

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0271
 0.35

Most Highly Correlated Transcripts

6402

hypothetical protein
0.8953

4179

hypothetical protein
0.8835

3731

hypothetical protein
0.8824

9382

hypothetical protein
0.8768

9238

hypothetical protein
0.8736

8748

Cnd1
0.8651

1217

(Tp_Myb1R2) SANT_TRF
0.8628

37665

ATP-synt_F superfamily
0.8607

7967

2A0106
0.8591

6652

hypothetical protein
0.8587

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate... cl19097 342.719 2.11E-115 236 - 473 specific 238211
TS_Pyrimidine_HMase superfamily Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate... - 342.719 2.11E-115 236 - 473 superfamily 267450
DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as... cl17426 142.662 5.34E-40 15 - 217 specific 238127
DHFR superfamily Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as... - 142.662 5.34E-40 15 - 217 superfamily 266674
PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional - 691.027 0 15 - 522 multi-dom 240299

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_1690 PHATRDRAFT_1690 157897 196694 451981 Cre17.g715900.t1.2 AT4G34570.1 555231

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004799 GO:0006231 GO:0004146 GO:0006545 GO:0009165 -

GO:0004799

thymidylate synthase activity

Details: 
Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate.
GO Category: 
MF

GO:0006231

dTMP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
GO Category: 
BP

GO:0004146

dihydrofolate reductase activity

Details: 
Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+.
GO Category: 
MF

GO:0006545

glycine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid.
GO Category: 
BP

GO:0009165

nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
GO Category: 
BP

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