8748 Cnd1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8748	chr_11a	Cnd1	407293	412342	-	Cnd1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443302	Thaps8748.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0076

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0256	0.42	0.0000000000014 1.1

Most Highly Correlated Transcripts

8301 hypothetical protein 0.9157	11354 hypothetical protein 0.9149	bd439 (bd439) POLBc_alpha 0.9143	29304 (TUB1) PLN00221 0.9109	24089 hypothetical protein 0.9002	6957 hypothetical protein 0.8946
2910 Motor_domain superfamily 0.8935	10002 Solute_trans_a superfamily 0.8933	20986 WcaG 0.8894	5662 hypothetical protein 0.888

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cnd1		non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of...	-	152.337	1.71E-41	1311 - 1512	multi-dom	257244

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49507	PHATRDRAFT_49507	239725	294968	107073	Cre05.g241150.t1.1	AT4G15890.1	475516

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments