1366 AbiThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1366	chr_1	Abi	1338528	1340108	+	Abi

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451451	Thaps1366.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0227

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0184	0.33	0.00067 4.8

Most Highly Correlated Transcripts

4372 hypothetical protein 0.9238	bd1876 (bd1876) NatB_MDM20 superfamily 0.9206	23232 hypothetical protein 0.8948	35224 Aldo_ket_red 0.8946	268880 WD40 superfamily 0.8934	33670 RNRR2 0.8897
23534 hypothetical protein 0.8836	21698 hypothetical protein 0.8783	269034 hypothetical protein 0.8759	22965 SrmB 0.874

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Abi		CAAX protease self-immunity; Members of this family are probably proteases (after a isoprenyl group...	cl00558	73.7462	6.12E-16	428 - 515	specific	251346
Abi superfamily		CAAX protease self-immunity; Members of this family are probably proteases (after a isoprenyl group...	-	73.7462	6.12E-16	428 - 515	superfamily	260497

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44438	PHATRDRAFT_44438	237350	254504	96857	Not available	AT5G60750.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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