268880 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268880	chr_5	WD40 superfamily	917951	919517	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449615	Thaps268880.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0226	0.29	0.13 0.0017

Most Highly Correlated Transcripts

21959 hypothetical protein 0.9393	22499 TrmA 0.9368	34021 Methyltrn_RNA_3 0.9326	262018 hypothetical protein 0.9291	262325 SpoU_methylase 0.9289	1374 RRM 0.9259
34413 RRM_ABT1_like 0.9232	29018 NMD3 0.9227	34176 AdoMet_MTases superfamily 0.9205	20629 YCII superfamily 0.9198

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	74.6788	3.55E-15	59 - 307	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	62.4135	9.98E-11	19 - 441	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47198	PHATRDRAFT_47198	228652	301735	Not available	Cre03.g205800.t1.2	Not available	503339

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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