1426 COG2403Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1426	chr_1	COG2403	1473874	1475431	+	COG2403

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451480	Thaps1426.3, Thaps1426.2, Thaps1426.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0451

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0023	0.43

Most Highly Correlated Transcripts

bd153 (bd153) NA 0.8669	2066 hypothetical protein 0.8494	21882 MutL_C 0.8346	4630 hypothetical protein 0.8284	3321 SMC_prok_B 0.8268	11743 hypothetical protein 0.8165
5768 hypothetical protein 0.8124	7401 hypothetical protein 0.8123	bd1890 (bd1890) NA 0.8083	23848 (Tp_HSF_3.5a) HSF_DNA-bind superfamily 0.8067

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG2403		Predicted GTPase [General function prediction only]	-	421.873	8.76E-144	4 - 446	multi-dom	225267

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

Add comment

Log in to post comments