14555 COG0523
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14555 chr_19a_19 COG0523 241517 243128 - COG0523

Synonyms

NCBI ID Ensembl Genomes exon ID
7449900 Thaps14555.1, Thaps14555.3, Thaps14555.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0355

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

bd848

(bd848) NA
0.8823

bd1692

(bd1692) NA
0.8686

bd764

(bd764) NA
0.8498

6893

ANK
0.8476

bd885

(bd885) NA
0.8398

11300

hypothetical protein
0.8345

262956

WASH-7_mid
0.8307

263610

COG3899
0.8277

11265

hypothetical protein
0.8224

bd884

(bd884) NA
0.822

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cobW CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression... cl17203 173.194 4.99E-51 22 - 253 specific 251330
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 173.194 4.99E-51 22 - 253 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to... cl08458 67.6222 7.42E-14 303 - 441 specific 214844
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 67.6222 7.42E-14 303 - 441 superfamily 263667
COG0523 Putative GTPases (G3E family) [General function prediction only] - 252.216 3.15E-79 21 - 443 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 202657 193759 62434 Not available Not available 306319

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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