14700 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
14700	chr_13	WD40 superfamily	1044306	1046032	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450538	Thaps14700.6, Thaps14700.4, Thaps14700.3, Thaps14700.2, Thaps14700.5, Thaps14700.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0466

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0008	0.44	0.00078 37000

Most Highly Correlated Transcripts

14370 WD40 superfamily 0.8925	bd790 (bd790) ABCC_MRP_domain2 0.8727	bd439 (bd439) POLBc_alpha 0.8382	bd1893 (bd1893) NA 0.8325	268404 (Lig1) dnl1 0.8321	4800 hypothetical protein 0.8305
3176 hypothetical protein 0.8274	10106 hypothetical protein 0.8207	8552 hypothetical protein 0.8192	bd463 (bd463) Aa_trans superfamily 0.8184

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	135.926	1.53E-36	119 - 398	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	136.757	8.67E-36	65 - 400	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_2648	PHATRDRAFT_2648	190463	256096	455430	Cre09.g406851.t1.1	AT4G22910.1	294749

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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