14370 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
14370	chr_17	WD40 superfamily	595079	596805	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442157	Thaps14370.6, Thaps14370.3, Thaps14370.1, Thaps14370.2, Thaps14370.5, Thaps14370.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0466

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0013	0.47	0.036 65

Most Highly Correlated Transcripts

14700 WD40 superfamily 0.8925	bd790 (bd790) ABCC_MRP_domain2 0.8727	bd439 (bd439) POLBc_alpha 0.8382	bd1893 (bd1893) NA 0.8325	bd463 (bd463) Aa_trans superfamily 0.8184	bd878 (bd878) AAT_like 0.8149
bd758 (bd758) NA 0.8117	bd950 (bd950) NA 0.7927	bd856 (bd856) NA 0.7909	bd951 (bd951) NA 0.7864

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	135.926	1.53E-36	119 - 398	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	136.757	8.67E-36	65 - 400	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

Not available -

Add comment

Log in to post comments