14899 DegQ
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14899 chr_19b_31 DegQ 121212 122946 - DegQ

Synonyms

NCBI ID Ensembl Genomes exon ID
7444368 Thaps14899.3, Thaps14899.4, Thaps14899.2, Thaps14899.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0114

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0062
 0.41

Most Highly Correlated Transcripts

bd1756

(bd1756) NA
0.9584

bd1839

(bd1839) NA
0.9474

bd1840

(bd1840) NA
0.9441

bd1946

(bd1946) NA
0.9316

bd690

(bd690) NA
0.8766

bd1835

(bd1835) NA
0.8744

11142

hypothetical protein
0.8734

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8569

bd933

(bd933) NA
0.8491

bd1841

(bd1841) CAP10 superfamily
0.8422

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PDZ_serine_protease PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins... cl00117 63.8128 1.40E-12 374 - 458 specific 238487
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 63.8128 1.40E-12 374 - 458 superfamily 260201
Trypsin_2 Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. cl19303 92.6913 2.52E-22 194 - 335 specific 257693
Trypsin_2 superfamily Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. - 92.6913 2.52E-22 194 - 335 superfamily 267656
DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [... - 202.818 4.56E-60 152 - 481 multi-dom 223343

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262478 Not available Not available 166567 438894 Cre12.g498500.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004295 GO:0006508 GO:0005515 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0004295

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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