15972 RRM2_SF3B4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15972 chr_2 RRM2_SF3B4 1478545 1479886 + RRM2_SF3B4

Synonyms

NCBI ID Ensembl Genomes exon ID
7446658 Thaps15972.1, Thaps15972.3, Thaps15972.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0442

Most Highly Correlated Transcripts

261357

NAD_binding_8 superfamily
0.8923

8067

Na_Ca_ex
0.8884

22359

hypothetical protein
0.88

11938

NADB_Rossmann superfamily
0.8792

34541

MgtA
0.8744

261466

0.8689

260880

hypothetical protein
0.8648

31737

fabG
0.8597

34442

CAP_ED
0.8596

33287

(UBA2) Ube1
0.8557

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_SF3B4 RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins; This... cl17169 167.087 1.41E-51 105 - 187 specific 240781
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 147.74 2.64E-44 17 - 90 superfamily 266524
RRM1_SF3B4 RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins; This... cl17169 147.74 2.64E-44 17 - 90 specific 240780
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 147.74 2.64E-44 17 - 90 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51283 PHATRDRAFT_51283 204730 191542 437029 Cre06.g254800.t1.2 AT2G18510.1 484926

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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