16511 Nuc_sug_transp
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16511 chr_9 Nuc_sug_transp 815484 816776 - Nuc_sug_transp

Synonyms

NCBI ID Ensembl Genomes exon ID
7448097 Thaps16511.2, Thaps16511.1, Thaps16511.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0368

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0045
 0.44

Most Highly Correlated Transcripts

41733

(THI1) PLN02444
0.8603

4108

hypothetical protein
0.765

bd686

(bd686) Glyco_transf_22 superfamily
0.7174

24274

hypothetical protein
0.6946

32481

HDc superfamily
0.6878

4082

hypothetical protein
0.6731

9737

hypothetical protein
0.6526

bd524

(bd524) NA
0.6398

262809

plant_peroxidase_like superfamily
0.6379

bd1935

(bd1935) NA
0.6226

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nuc_sug_transp Nucleotide-sugar transporter; This family of membrane proteins transport nucleotide sugars from the... - 79.2701 2.47E-17 122 - 354 multi-dom 252406

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
19928 PHATRDRAFT_29042 PHATRDRAFT_29042 208223 286201 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000139 GO:0005351 GO:0008643 GO:0016021 -

GO:0000139

Golgi membrane

Details: 
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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