16607 PcbCThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
16607	chr_7	PcbC	1200124	1201308	+	PcbC

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450651	Thaps16607.2, Thaps16607.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0470

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0219	0.41	1.2 7700

Most Highly Correlated Transcripts

21676 DUF2252 superfamily 0.8867	270222 0.8469	5915 hypothetical protein 0.845	33696 zf-CHY 0.8402	6075 hypothetical protein 0.8384	263610 COG3899 0.832
22802 hypothetical protein 0.8311	12836 EEP superfamily 0.8292	7725 hypothetical protein 0.8247	263391 EMP70 superfamily 0.8205

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PcbC		Isopenicillin N synthase and related dioxygenases [General function prediction only]	-	67.7759	5.78E-13	93 - 330	multi-dom	226022

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12544	PHATRDRAFT_12544	225138	147225	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments