16679 RRM_PPIL4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16679 chr_2 RRM_PPIL4 1759666 1761758 + RRM_PPIL4

Synonyms

NCBI ID Ensembl Genomes exon ID
7452296 Thaps16679.1, Thaps16679.3, Thaps16679.4, Thaps16679.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0286
 0.31

Most Highly Correlated Transcripts

1693

hypothetical protein
0.8579

32713

DnaJ
0.8458

33182

S_TKc
0.8407

21860

PRP40
0.839

9591

efThoc1 superfamily
0.837

269503

(Tp_HSF_1e) regulator [Rayko]
0.8322

19913

ybbN
0.8313

8503

DUF2431
0.83

12943

NARP1
0.8293

262487

HepA
0.8282

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_PPIL4 RNA recognition motif in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins;... cl17169 157.425 4.21E-46 236 - 318 specific 240681
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 157.425 4.21E-46 236 - 318 superfamily 266524
cyclophilin superfamily cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic... - 133.62 1.36E-36 4 - 173 superfamily 260252
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 62.657 5.09E-11 230 - 320 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44426 PHATRDRAFT_44426 159863 166600 Not available Not available AT1G53720.1 264201

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0006457 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

Details: 
Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
GO Category: 
MF

GO:0004600

NA

Details: 
NA
GO Category: 
NA

GO:0030051

NA

Details: 
NA
GO Category: 
NA

GO:0042027

NA

Details: 
NA
GO Category: 
NA

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