19913 ybbNThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19913	chr_10	ybbN	371959	374479	+	ybbN

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps19913.1, Thaps19913.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0222

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0030	0.47	0.00000015 1000

Most Highly Correlated Transcripts

270310 hypothetical protein 1	36407 PRK09427 0.8875	263118 ABC_ATPase superfamily 0.8703	11612 AFD_class_I superfamily 0.8595	1704 ArsA_ATPase 0.8575	261777 MIF4G 0.8372
33033 YSH1 0.8317	16679 RRM_PPIL4 0.8313	14638 Pkinase 0.8307	32713 DnaJ 0.8272

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ybbN		ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain....	cl00388	90.4087	2.25E-21	335 - 429	specific	239254
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	90.4087	2.25E-21	335 - 429	superfamily	260398
PUB		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	cl15262	76.652	1.62E-16	499 - 584	specific	198416
PUB superfamily		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	-	76.652	1.62E-16	499 - 584	superfamily	265658

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14096	PHATRDRAFT_14096	267909	235101	466974	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0006118 GO:0004791 -

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