17228 Tryp_SPcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
17228	chr_13	Tryp_SPc	773203	774060	+	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447859	Thaps17228.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0372

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0013	0.47	0.036 65

Most Highly Correlated Transcripts

bd1765 (bd1765) NA 0.9329	bd1161 (bd1161) NA 0.9326	bd718 (bd718) PRK10387 0.9274	bd1893 (bd1893) NA 0.9212	bd1645 (bd1645) tpt 0.915	bd463 (bd463) Aa_trans superfamily 0.909
bd218 (bd218) Chloroa_b-bind superfamily 0.9081	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9035	bd1306 (bd1306) NA 0.9031	bd1820 (bd1820) Fasciclin 0.9009

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	198.269	3.76E-62	40 - 264	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	198.269	3.76E-62	40 - 264	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	197.515	6.91E-62	41 - 261	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
262348		Not available	194632	263530	463107	Not available	AT3G52050.4	501578

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 -

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