1762 PRA1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1762	chr_1	PRA1 superfamily	2358685	2359627	+	PRA1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449046	Thaps1762.1, Thaps1762.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0137

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0171	0.35	0.00000000000001 1200

Most Highly Correlated Transcripts

21722 Aldo_ket_red 0.931	263399 CypX 0.9221	5038 DUF179 0.9208	35956 SIR2 superfamily 0.9194	11187 hypothetical protein 0.9158	2107 hypothetical protein 0.9137
10059 hypothetical protein 0.9124	32139 hypothetical protein 0.9109	2515 nst superfamily 0.9105	32945 (SDH1) sdhB 0.9099

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PRA1 superfamily		PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab...	-	61.9	3.24E-12	83 - 238	superfamily	261193

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47212	PHATRDRAFT_47212	151947	322350	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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