2515 nst superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2515 chr_2 nst superfamily 1178669 1179608 - nst superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444668 Thaps2515.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0137

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0048
 0.39

Most Highly Correlated Transcripts

6889

hypothetical protein
0.9307

11187

hypothetical protein
0.9271

10856

hypothetical protein
0.9241

2107

hypothetical protein
0.9114

3310

hypothetical protein
0.9112

1762

PRA1 superfamily
0.9105

8038

hypothetical protein
0.9054

23170

hypothetical protein
0.904

23378

hypothetical protein
0.9026

1383

(PDS1) phytoene_desat
0.9021

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nst superfamily UDP-galactose transporter; The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-... - 72.0024 3.51E-15 52 - 277 superfamily 129885

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46194 PHATRDRAFT_46194 197501 206107 96775 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005338 GO:0015780 GO:0016021 GO:0000139 GO:0005351 GO:0008643 -

GO:0005338

nucleotide-sugar transmembrane transporter activity

Details: 
Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
MF

GO:0015780

nucleotide-sugar transport

Details: 
The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0000139

Golgi membrane

Details: 
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

Add comment

Log in to post comments