17845 RRM_CNOT4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17845 chr_3 RRM_CNOT4 1006835 1009331 - RRM_CNOT4

Synonyms

NCBI ID Ensembl Genomes exon ID
7448755 Thaps17845.1, Thaps17845.2, Thaps17845.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0272

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

35929

(MAPKKK) S_TKc
0.9334

33699

TRX_family
0.9218

12500

SNF2_N
0.9211

23954

hypothetical protein
0.9206

30950

Glyco_hydro_47
0.9078

8518

hypothetical protein
0.9071

264679

Syja_N
0.9055

32564

KISc
0.9039

36563

MYSc
0.9036

8259

hypothetical protein
0.902

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_CNOT4 RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar... cl17169 181.583 4.40E-54 91 - 188 specific 240884
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 181.583 4.40E-54 91 - 188 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10102 PHATRDRAFT_10102 142727 297855 234154 Cre01.g040500.t1.2 AT3G45630.1 331074

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0003676 GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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