18820 (Tp_Myb4R1a) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18820 chr_2 (Tp_Myb4R1a) SANT 428300 428902 - SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7442244 Thaps18820.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0333

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0135
 0.41

Most Highly Correlated Transcripts

5760

SART-1
0.9008

262616

(MYB22)
0.885

24604

hypothetical protein
0.8842

21220

KU superfamily
0.8797

264711

(ZFP3) zinc finger like protein
0.8748

269231

MFS
0.8744

41117

PRP1_N
0.8729

22244

hypothetical protein
0.8709

23469

Plus-3
0.8688

9017

hypothetical protein
0.8678

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 55.6594 2.77E-11 71 - 111 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 55.6594 2.77E-11 71 - 111 superfamily 266586
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 55.6594 2.77E-11 71 - 111 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 55.6594 2.77E-11 71 - 111 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15516 PHATRDRAFT_15516 Not available 195783 46631 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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