19622 Sedlin_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19622 chr_5 Sedlin_N 171337 171986 - Sedlin_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7447260 Thaps19622.1, Thaps19622.3, Thaps19622.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0150

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0020
 0.47

Most Highly Correlated Transcripts

268257

fabG
0.91

1818

hypothetical protein
0.8794

2312

hypothetical protein
0.8793

bd446

(bd446) HrpA
0.8758

bd392

(bd392) DEXDc
0.8728

10893

hypothetical protein
0.8715

25040

NA
0.8663

6491

hypothetical protein
0.8658

31778

Sybindin superfamily
0.8641

262860

NRDE superfamily
0.862

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sedlin_N Sedlin, N-terminal conserved region; Mutations in this protein are associated with the X-linked... cl17809 143.912 1.55E-44 9 - 136 specific 252712
Sedlin_N superfamily Sedlin, N-terminal conserved region; Mutations in this protein are associated with the X-linked... - 143.912 1.55E-44 9 - 136 superfamily 266853

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9828 PHATRDRAFT_9828 204641 185003 78291 Cre13.g571600.t1.2 AT1G80500.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005478 GO:0005622 GO:0006888 -

GO:0005478

NA

Details: 
NA
GO Category: 
NA

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006888

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

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