2022 HAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2022	chr_1	HA	2971964	2973987	+	HA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445475	Thaps2022.1, Thaps2022.2, Thaps2022.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0129

Most Highly Correlated Transcripts

5066 hypothetical protein 0.9146	6630 hypothetical protein 0.9083	9275 hypothetical protein 0.9065	21220 KU superfamily 0.9032	950 hypothetical protein 0.903	21304 hypothetical protein 0.9018
21843 hypothetical protein 0.9014	23602 hypothetical protein 0.8999	2017 HA 0.8974	20662 CactinC_cactus 0.8974

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	64.2489	7.40E-13	357 - 438	superfamily	251968
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	64.2489	7.40E-13	357 - 438	superfamily	251968

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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