20633 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20633 chr_1 Aa_trans superfamily 489568 491517 - Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449124 Thaps20633.2, Thaps20633.1, Thaps20633.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0404

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0126
 0.34

Most Highly Correlated Transcripts

3260

hypothetical protein
0.9357

3456

Peptidase_S41_CPP
0.9256

1218

Aa_trans superfamily
0.9231

28651

(AAT1_1) PLN02644
0.9212

39767

TLP_HIUase
0.917

4482

hypothetical protein
0.9158

22902

hypothetical protein
0.9115

10564

DadA
0.9042

32139

hypothetical protein
0.9026

263012

Ras_like_GTPase superfamily
0.8991

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 88.1237 5.39E-19 87 - 542 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40731 PHATRDRAFT_40731 260630 105825 207295 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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