10564 DadAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10564	chr_17	DadA	77997	80211	-	DadA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444167	Thaps10564.2, Thaps10564.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0142

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0152	0.38	0.14 0.024

Most Highly Correlated Transcripts

bd410 (bd410) HNHc 0.9211	bd1841 (bd1841) CAP10 superfamily 0.907	20633 Aa_trans superfamily 0.9042	31052 S_TKc 0.8974	3922 hypothetical protein 0.889	262157 E1_like_apg7 0.8884
bd415 (bd415) arom_aa_hydroxylase superfamily 0.8842	25325 hypothetical protein 0.8819	22850 DUF4239 0.8791	22297 VPS9 superfamily 0.8786

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Phn_aa_oxid superfamily		putative aminophosphonate oxidoreductase; This clade of sequences are members of the pfam01266...	-	78.6704	1.45E-15	195 - 698	superfamily	132372
DadA		Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	-	127.323	8.36E-32	195 - 653	multi-dom	223737

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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