20637 SNc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20637 chr_1 SNc 508057 511577 - SNc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0078
 0.42

Most Highly Correlated Transcripts

bd719

(bd719) NA
0.9269

bd258

(bd258) HU
0.9049

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9037

bd687

(bd687) NA
0.8951

bd1765

(bd1765) NA
0.8937

bd1820

(bd1820) Fasciclin
0.893

24835

hypothetical protein
0.8879

15950

Peptidase_A22B superfamily
0.8804

bd218

(bd218) Chloroa_b-bind superfamily
0.8801

264365

PRK08661
0.8787

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein... cl02573 61.0747 1.46E-11 751 - 801 specific 119391
TUDOR superfamily Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein... - 61.0747 1.46E-11 751 - 801 superfamily 261354
SNc superfamily Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes... - 72.6922 8.40E-15 547 - 680 superfamily 238102
SNc superfamily Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes... - 72.6922 8.40E-15 547 - 680 superfamily 238102
SNc superfamily Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes... - 72.6922 8.40E-15 547 - 680 superfamily 238102
SNc Staphylococcal nuclease homologues; Staphylococcal nuclease homologues. - 72.6793 9.41E-15 541 - 680 multi-dom 214615
SNc Staphylococcal nuclease homologues; Staphylococcal nuclease homologues. - 72.6793 9.41E-15 541 - 680 multi-dom 214615
SNc Staphylococcal nuclease homologues; Staphylococcal nuclease homologues. - 72.6793 9.41E-15 541 - 680 multi-dom 214615
TUDOR Tudor domain; Tudor domain. - 72.0299 1.18E-14 706 - 821 multi-dom 249965

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50440 PHATRDRAFT_50440 225570 211191 452958 Cre11.g477850.t1.1 AT5G61780.1 349305

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004518 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

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