20737 SunThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20737	chr_1	Sun	1057799	1059506	-	Sun

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445055	Thaps20737.1, Thaps20737.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0227

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0226	0.29	0.13 0.0017

Most Highly Correlated Transcripts

22356 PseudoU_synth_ScPUS7 0.8825	5104 hypothetical protein 0.8797	5241 RNase_P_p30 superfamily 0.8795	21709 hypothetical protein 0.8761	22861 hypothetical protein 0.8751	4921 DUF2779 superfamily 0.8745
2157 D123 superfamily 0.8661	5540 hypothetical protein 0.8647	4372 hypothetical protein 0.8636	20814 hypothetical protein 0.8619

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sun		tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	-	171.804	2.25E-48	170 - 470	multi-dom	223222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48416	PHATRDRAFT_48416	137764	154743	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008757 -

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