5241 RNase_P_p30 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5241	chr_5	RNase_P_p30 superfamily	693490	694911	-	RNase_P_p30 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446419	Thaps5241.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0244

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0091	0.31	0.00000003 0.31

Most Highly Correlated Transcripts

3292 COG2319 0.9125	20737 Sun 0.8795	260748 AdoMet_MTases superfamily 0.8645	22356 PseudoU_synth_ScPUS7 0.8625	4108 hypothetical protein 0.8582	5540 hypothetical protein 0.8577
31819 DUF2419 superfamily 0.852	4921 DUF2779 superfamily 0.8491	24429 PRMT5 superfamily 0.8487	263917 0.8481

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_P_p30 superfamily		RNase P subunit p30; This protein is part of the RNase P complex that is involved in tRNA...	-	59.9126	7.27E-11	104 - 292	superfamily	261717

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32726	PHATRDRAFT_32726	275665	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments