20786 SCP_euk
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20786 chr_1 SCP_euk 1279336 1281471 - SCP_euk

Synonyms

NCBI ID Ensembl Genomes exon ID
7451440 Thaps20786.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0143

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0060
 0.47

Most Highly Correlated Transcripts

23113

hypothetical protein
0.8633

bd1841

(bd1841) CAP10 superfamily
0.8601

29322

AAT_I superfamily
0.8566

6534

DER1
0.8561

25678

hypothetical protein
0.8503

22804

Delta6-FADS-like
0.8476

10474

hypothetical protein
0.8469

21429

hypothetical protein
0.8468

bd1786

(bd1786) GLTP superfamily
0.8431

8849

U-box superfamily
0.8426

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes... cl00133 60.6116 4.63E-11 415 - 544 specific 240180
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 60.6116 4.63E-11 415 - 544 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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