20829 HPPThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20829	chr_1	HPP	1506785	1508995	-	HPP

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445039	Thaps20829.6, Thaps20829.5, Thaps20829.4, Thaps20829.2, Thaps20829.1, Thaps20829.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0360

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0217	0.33	0.94 1200

Most Highly Correlated Transcripts

bd1806 (bd1806) AAT_I superfamily 0.8875	20827 hypothetical protein 0.8624	4067 hypothetical protein 0.8613	bd524 (bd524) NA 0.8596	39516 PLN02951 0.8465	22720 hypothetical protein 0.8421
21143 hypothetical protein 0.8373	5394 hypothetical protein 0.8244	11841 hypothetical protein 0.8243	6370 SpoU_methylase superfamily 0.8165

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HPP superfamily		HPP family; These proteins are integral membrane proteins with four transmembrane spanning helices...	-	77.9012	5.01E-17	456 - 572	superfamily	252920
HPP superfamily		HPP family; These proteins are integral membrane proteins with four transmembrane spanning helices...	-	77.9012	5.01E-17	456 - 572	superfamily	252920

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	162784	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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