2088 UAAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2088	chr_2	UAA	134315	135500	-	UAA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452165	Thaps2088.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0475

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0046	0.42	0.56 320

Most Highly Correlated Transcripts

3617 SRPBCC superfamily 0.8621	262616 (MYB22) 0.8571	1118 hypothetical protein 0.8453	9036 hypothetical protein 0.8448	34043 PKc_like superfamily 0.8419	9374 hypothetical protein 0.8419
10037 hypothetical protein 0.8415	24327 hypothetical protein 0.839	5353 hypothetical protein 0.8376	3266 Glu_cyclase_2 superfamily 0.8371

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UAA		UAA transporter family; This family includes transporters with a specificity for UDP-N-...	-	88.046	5.50E-20	68 - 294	multi-dom	254807

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43347	PHATRDRAFT_43347	Not available	284750	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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