20880 PhoDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20880	chr_1	PhoD	1797701	1799781	+	PhoD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443114	Thaps20880.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0372

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0246	0.41	0.00038 0.0025

Most Highly Correlated Transcripts

269655 PRK09330 0.8604	6680 hypothetical protein 0.8359	33772 S_TKc 0.8211	39802 Peptidase_C19 superfamily 0.8161	11492 hypothetical protein 0.8099	23976 SBF superfamily 0.8073
23496 plant_peroxidase_like 0.8011	10157 hypothetical protein 0.7978	24304 hypothetical protein 0.7912	22667 hypothetical protein 0.7896

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MPP_PhoD		Bacillus subtilis PhoD and related proteins, metallophosphatase domain; PhoD (also known as...	cl13995	82.4777	9.06E-18	163 - 391	specific	163632
MPP_superfamily superfamily		metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known...	-	82.4777	9.06E-18	163 - 391	superfamily	265413
PhoD		Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	-	87.1055	2.66E-18	45 - 431	multi-dom	226070

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	317714

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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