21004 TFIIF_beta superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21004 chr_1 TFIIF_beta superfamily 2484034 2486902 + TFIIF_beta superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449072 Thaps21004.3, Thaps21004.2, Thaps21004.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0350

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9301

13393

PLN02321
0.9019

261400

NA
0.9016

264556

FBPase
0.8935

3180

hypothetical protein
0.8871

2540

hypothetical protein
0.8862

13448

Sec1
0.8831

6028

NA
0.8825

24525

hypothetical protein
0.8812

30701

PRK05279
0.8778

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TFIIF_beta superfamily Transcription initiation factor IIF, beta subunit; The TFIIF-beta subunit, also called RNA... - 76.6553 1.41E-15 552 - 829 superfamily 261187

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46429 PHATRDRAFT_46429 213663 312159 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004550 GO:0005524 GO:0006183 GO:0006228 GO:0006241 -

GO:0004550

nucleoside diphosphate kinase activity

Details: 
Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006183

GTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate.
GO Category: 
BP

GO:0006228

UTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate.
GO Category: 
BP

GO:0006241

CTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate.
GO Category: 
BP

Add comment

Log in to post comments