21026 PRP21_like_P superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21026 chr_1 PRP21_like_P superfamily 2584952 2587455 - PRP21_like_P superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447606 Thaps21026.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0254

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9283

22265

hypothetical protein
0.9015

4287

PBPb
0.8908

8130

hypothetical protein
0.8904

4862

Bromodomain superfamily
0.8857

23150

FAAL
0.8853

24183

hypothetical protein
0.8778

21465

hypothetical protein
0.8701

25457

hypothetical protein
0.8681

21791

hypothetical protein
0.8668

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP21_like_P superfamily Pre-mRNA splicing factor PRP21 like protein; This domain family is found in eukaryotes, and is... - 122.944 2.67E-31 308 - 511 superfamily 256914
SWAP Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible... cl02715 62.6049 3.68E-12 15 - 69 specific 197818
Surp superfamily Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-... - 62.6049 3.68E-12 15 - 69 superfamily 261419
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 62.4727 7.54E-12 689 - 764 superfamily 260222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50309 PHATRDRAFT_50309 235012 296307 234832 Cre06.g307450.t1.2 AT1G14650.2 481939

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003723 GO:0006396 GO:0006464 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

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