21308 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21308	chr_2	RING	1162088	1164574	+	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450380	Thaps21308.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0096

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0152	0.38	0.14 0.024

Most Highly Correlated Transcripts

20868 hypothetical protein 0.9171	1237 Seipin superfamily 0.915	10753 hypothetical protein 0.8937	21238 (ALD3) ALDH_F3-13-14_CALDH-like 0.8898	24184 ArfGap 0.8885	261414 2A0109 0.8821
9884 hypothetical protein 0.8821	4758 (Tp_HSF_2.2e) HSF_DNA-bind superfamily 0.8812	21411 hypothetical protein 0.88	885 DUF544 superfamily 0.8748

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	61.6928	8.22E-12	565 - 610	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	61.6928	8.22E-12	565 - 610	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46043	PHATRDRAFT_46043	237556	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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