21893 CysPc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21893 chr_3 CysPc 1657165 1660363 - CysPc

Synonyms

NCBI ID Ensembl Genomes exon ID
7449530 Thaps21893.1, Thaps21893.2, Thaps21893.4, Thaps21893.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0130

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0264
 0.37

Most Highly Correlated Transcripts

24829

Ubox
0.9171

4445

hypothetical protein
0.917

262719

CHD
0.9139

25052

hypothetical protein
0.9135

36337

Vps35 superfamily
0.9103

5291

hypothetical protein
0.9076

3842

hypothetical protein
0.9074

3694

hypothetical protein
0.8975

9364

hypothetical protein
0.8973

5051

hypothetical protein
0.896

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like.... cl00051 230.296 4.78E-68 338 - 665 specific 238004
CysPc superfamily Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like.... - 230.296 4.78E-68 338 - 665 superfamily 260158
Calpain_III superfamily Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases,... - 64.694 5.42E-12 826 - 968 superfamily 260230

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 236917 317670 459690 Not available Not available 315088

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004198 GO:0005622 GO:0006508 GO:0004197 GO:0016946 -

GO:0004198

calcium-dependent cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0016946

NA

Details: 
NA
GO Category: 
NA

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