262719 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262719 chr_6 CHD 334181 335070 - CHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7451137 Thaps262719.2, Thaps262719.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0126

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0105
 0.42

Most Highly Correlated Transcripts

24829

Ubox
0.9284

5291

hypothetical protein
0.9226

21893

CysPc
0.9139

34191

CobN_like
0.9121

268472

Sugar_tr
0.9058

34590

nt_trans superfamily
0.8949

11594

DUF2042 superfamily
0.8912

27813

Hid1 superfamily
0.8888

261908

PLN02889
0.8875

23517

PRK13759
0.8841

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 195.876 3.92E-62 89 - 256 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 195.876 3.92E-62 89 - 256 superfamily 264492
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 195.554 7.86E-62 53 - 233 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 GO:0004016 GO:0008294 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

GO:0004016

adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
GO Category: 
MF

GO:0008294

calcium- and calmodulin-responsive adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin.
GO Category: 
MF

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