21997 TPR_12Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21997	chr_3	TPR_12	2146573	2154971	-	TPR_12

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452105	Thaps21997.2, Thaps21997.5, Thaps21997.4, Thaps21997.1, Thaps21997.6, Thaps21997.8, Thaps21997.3, Thaps21997.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0415

Most Highly Correlated Transcripts

24618 hypothetical protein 0.9624	25451 AAA superfamily 0.943	1216 hypothetical protein 0.9377	22882 PUB 0.9375	20865 DUF1162 superfamily 0.9369	23582 hypothetical protein 0.9345
8535 hypothetical protein 0.9307	21268 zf-CXXC 0.9289	25593 hypothetical protein 0.927	10815 Peptidase_S41_TRI 0.9244

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	61.6242	6.88E-11	645 - 717	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	61.6242	6.88E-11	645 - 717	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	61.6242	6.88E-11	645 - 717	multi-dom	257749
PEP_TPR_lipo		putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a...	-	66.2606	9.90E-11	1340 - 2357	multi-dom	234059

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre06.g297700.t1.1	AT4G10840.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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