22882 PUBThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22882	chr_5	PUB	1904568	1911416	-	PUB

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444878	Thaps22882.6, Thaps22882.9, Thaps22882.8, Thaps22882.5, Thaps22882.2, Thaps22882.1, Thaps22882.3, Thaps22882.4, Thaps22882.10, Thaps22882.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0476

Most Highly Correlated Transcripts

21997 TPR_12 0.9375	24618 hypothetical protein 0.9366	6068 KH-I 0.9234	25451 AAA superfamily 0.923	22922 hypothetical protein 0.9191	22265 hypothetical protein 0.917
21158 hypothetical protein 0.9165	6922 hypothetical protein 0.9156	23207 hypothetical protein 0.9132	25593 hypothetical protein 0.913

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PUB		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	cl15262	69.7184	1.08E-13	29 - 91	specific	198416
PUB superfamily		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	-	69.7184	1.08E-13	29 - 91	superfamily	265658
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	61.239	5.80E-11	973 - 1070	multi-dom	257749

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments