22092 (COP3) Coatomer_WDADThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22092	chr_4	(COP3) Coatomer_WDAD	234271	237508	+	Coatomer_WDAD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446746	Thaps22092.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0177

Most Highly Correlated Transcripts

bd1949 (bd1949) NA 0.9366	bd687 (bd687) NA 0.9159	bd446 (bd446) HrpA 0.9099	bd624 (bd624) Glyco_transf_34 superfamily 0.8778	9393 hypothetical protein 0.8763	bd1820 (bd1820) Fasciclin 0.8729
261357 NAD_binding_8 superfamily 0.8711	25653 hypothetical protein 0.8698	24784 pepsin_like 0.8685	7426 hypothetical protein 0.8598

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	213.351	4.96E-62	54 - 326	superfamily	238121
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	213.351	4.96E-62	54 - 326	superfamily	238121
Coatomer_WDAD		Coatomer WD associated region; This region is composed of WD40 repeats.	-	495.958	2.98E-165	356 - 821	multi-dom	252340
COG2319		FOG: WD40 repeat [General function prediction only]	-	151.009	1.16E-38	44 - 359	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_27518	PHATRDRAFT_27518	231452	282837	369371	Cre02.g118500.t1.1	AT1G79990.3	541161

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006886 GO:0008565 -

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