22202 CHDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22202	chr_4	CHD	815720	819226	+	CHD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453324	Thaps22202.1, Thaps22202.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0147

Most Highly Correlated Transcripts

2742 DUF1336 superfamily 0.8973	6167 Cullin 0.8968	36372 S_TKc 0.8938	26212 (COP2) COG5096 0.8923	262287 hypothetical protein 0.889	12836 EEP superfamily 0.8887
24334 EXS superfamily 0.8873	4287 PBPb 0.8858	261916 RING 0.8833	23560 hypothetical protein 0.8832

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CHD		cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also...	cl11967	78.3898	3.02E-16	739 - 925	specific	143636
Nucleotidyl_cyc_III superfamily		Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group...	-	78.3898	3.02E-16	739 - 925	superfamily	264492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46904	PHATR_46904	183963	328688	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

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