22293 PLN00178
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22293 chr_4 PLN00178 1260633 1262684 - PLN00178

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps22293.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0279
 0.39

Most Highly Correlated Transcripts

270365

hypothetical protein
1

42704

(LEU2) IPMI
0.9252

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.9131

42213

PLN02286
0.9111

21258

DUF3523
0.9021

263424

PLN02551
0.8895

32140

DHDPS
0.888

40223

PLN02347
0.8875

23887

hypothetical protein
0.8866

20613

PLPDE_III_DapDC
0.8837

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the... cl19102 133.531 3.78E-36 291 - 438 specific 250346
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 133.531 3.78E-36 291 - 438 superfamily 267455
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 63.684 1.42E-12 155 - 212 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 63.684 1.42E-12 155 - 212 superfamily 251971
PLN00178 sulfite reductase - 1093.26 0 49 - 683 multi-dom 177773

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9538 PHATRDRAFT_9538 172194 55911 454897 Cre16.g693202.t1.1 AT5G04590.1 552537

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0050311 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0050311

sulfite reductase (ferredoxin) activity

Details: 
Catalysis of the reaction: hydrogen sulfide + 3 oxidized ferredoxin + 3 H2O = sulfite + 3 reduced ferredoxin.
GO Category: 
MF

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