22618 SF1_like-KH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22618 chr_5 SF1_like-KH 493826 496378 + SF1_like-KH

Synonyms

NCBI ID Ensembl Genomes exon ID
7451763 Thaps22618.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0315

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9036

22284

Nudix_Hydrolase superfamily
0.8977

270030

HECTc
0.8922

25451

AAA superfamily
0.8901

23150

FAAL
0.8899

7261

hypothetical protein
0.8873

5689

HA
0.8846

22688

hypothetical protein
0.8809

25307

hypothetical protein
0.8801

24580

hypothetical protein
0.8799

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically... cl17245 148.931 7.50E-42 290 - 405 specific 239088
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 148.931 7.50E-42 290 - 405 superfamily 266583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 186876 253158 228949 Cre09.g386731.t1.1 AT5G51300.3 483336

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

Add comment

Log in to post comments