22284 Nudix_Hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22284 chr_4 Nudix_Hydrolase superfamily 1190454 1192624 - Nudix_Hydrolase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446090 Thaps22284.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Most Highly Correlated Transcripts

12836

EEP superfamily
0.937

22265

hypothetical protein
0.9208

22128

DENN
0.9124

20662

CactinC_cactus
0.9094

22928

hypothetical protein
0.9074

4862

Bromodomain superfamily
0.9042

261310

COG3349
0.9015

25236

hypothetical protein
0.9006

269169

Beach
0.8987

10398

hypothetical protein
0.8978

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nudix_Hydrolase superfamily Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes... - 115.028 1.38E-29 128 - 329 superfamily 260427
DCP2 superfamily Dcp2, box A domain; This domain is always found to the amino terminal side of pfam00293. This... - 86.5351 2.79E-20 9 - 125 superfamily 191168

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46543 PHATRDRAFT_46543 161909 68588 465690 Cre07.g344850.t1.2 AT5G13570.1 247661

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0003923 GO:0016787 GO:0051336 -

GO:0003923

GPI-anchor transamidase activity

Details: 
Catalysis of the formation of the linkage between a protein and a glycosylphosphatidylinositol anchor. The reaction probably occurs by subjecting a peptide bond to nucleophilic attack by the amino group of ethanolamine-GPI, transferring the protein from a signal peptide to the GPI anchor.
GO Category: 
MF

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0051336

regulation of hydrolase activity

Details: 
Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
BP

Add comment

Log in to post comments