22710 PDI_a_familyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22710	chr_5	PDI_a_family	1036312	1037886	+	PDI_a_family

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450040	Thaps22710.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0051

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0031	0.36	0.00007 15000

Most Highly Correlated Transcripts

4524 DHQS 0.9257	38964 Chorismate_synthase 0.8952	bd174 (bd174) Tim17 superfamily 0.8895	268062 PRK14293 0.8814	36007 Aldolase_II superfamily 0.8732	22293 PLN00178 0.8715
268443 SAICAR_synt_Sc 0.8636	13393 PLN02321 0.8633	21888 hypothetical protein 0.8611	35164 acolac_lg 0.8561

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PDI_a_family		Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic...	cl00388	66.4801	2.04E-13	100 - 173	specific	239259
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	66.4801	2.04E-13	100 - 173	superfamily	260398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49158	PHATRDRAFT_49158	236164	217007	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0006118 -

Add comment

Log in to post comments