23018 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23018 chr_6 RNase_PH superfamily 488533 489743 + RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448561 Thaps23018.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0240

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9461

268443

SAICAR_synt_Sc
0.9258

21706

S1_Rrp4
0.9185

39539

Pkinase
0.911

268574

Tim17
0.909

268144

OTU
0.9089

23819

hypothetical protein
0.9072

31150

rpsI
0.9058

19826

LSm1
0.9054

268859

(GGTB1) PLN03201
0.9037

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 122.704 1.46E-33 2 - 200 superfamily 261591

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55141 PHATRDRAFT_55141 186105 25945 Not available Not available AT3G07750.2 491455

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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