21706 S1_Rrp4Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21706	chr_3	S1_Rrp4	739194	740434	-	S1_Rrp4

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441710	Thaps21706.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0228

Most Highly Correlated Transcripts

262555 AAT_I superfamily 0.9283	22465 PTZ00169 0.9193	23018 RNase_PH superfamily 0.9185	19158 GRX_PICOT_like 0.9139	268443 SAICAR_synt_Sc 0.9119	39536 Zn-ribbon_RPB9 0.9094
1676 hypothetical protein 0.9069	40200 TRX_reduct 0.906	268574 Tim17 0.9019	20712 hypothetical protein 0.9012

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_Rrp4		S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety...	cl09927	104.939	7.91E-28	141 - 242	specific	240215
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	104.939	7.91E-28	141 - 242	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_bd509	PHATRDRAFT_bd509	188261	285696	56120	Cre12.g496450.t1.2	AT1G03360.1	249437

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

GO:0000175 GO:0004534 GO:0016896 -

Add comment

Log in to post comments