23786 DUF547 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23786	chr_8	DUF547 superfamily	744485	746306	-	DUF547 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449810	Thaps23786.3, Thaps23786.1, Thaps23786.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0485

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0216	0.36	5.1 120000

Most Highly Correlated Transcripts

bd740 (bd740) NA 0.8926	19158 GRX_PICOT_like 0.8546	264271 PKc_like superfamily 0.8465	24204 lysozyme_like superfamily 0.8446	1692 hypothetical protein 0.8372	3936 MFS_1 0.8355
12899 AAA 0.8306	bd1803 (bd1803) NA 0.8292	24293 hypothetical protein 0.8261	36599 CysJ 0.826

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF547 superfamily		Protein of unknown function, DUF547; Family of uncharacterized proteins from C. elegans and A....	-	91.4105	4.38E-22	294 - 426	superfamily	252798
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	77.8369	1.15E-17	2 - 68	superfamily	260398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_bd1233	PHATRDRAFT_bd1233	Not available	Not available	Not available	Cre06.g278183.t1.1	AT3G11920.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0006118 GO:0045454 -

Add comment

Log in to post comments