23798 Delta12-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23798 chr_8 Delta12-FADS-like 801160 802593 - Delta12-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7449825 Thaps23798.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

bd1658

(bd1658) NA
0.9042

bd897

(bd897) NA
0.8816

38306

Chloroa_b-bind
0.8788

bd2088

(bd2088) rbcL
0.8763

23291

hypothetical protein
0.8684

bd760

(bd760) ZnMc superfamily
0.8679

31851

BKR_SDR_c
0.8598

bd1403

(bd1403) NA
0.856

plastidpE

0.852

bd1809

(bd1809) ZnMc_pappalysin_like
0.8505

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes,... cl00615 193.211 1.59E-58 60 - 371 specific 239584
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 193.211 1.59E-58 60 - 371 superfamily 260534
DesA Fatty acid desaturase [Lipid metabolism] - 106.405 4.95E-26 49 - 423 multi-dom 225779

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
37705 PHATRDRAFT_25769 PHATRDRAFT_25769 277802 261990 Not available Cre17.g711150.t1.2 AT3G12120.2 264618

KEGG

KEGG description KEGG Pathway
Biosynthesis of unsaturated fatty acids map01040

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016215 GO:0018688 GO:0018689 GO:0042389 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016215

acyl-CoA desaturase activity

Details: 
Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = desaturated-acyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

GO:0018688

DDT 2,3-dioxygenase activity

Details: 
Catalysis of the reaction: 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane + O2 + 2 H+ + 2 e- = cis-2,3-dihydrodiol DDT. 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane is also known as DDT.
GO Category: 
MF

GO:0018689

naphthalene disulfonate 1,2-dioxygenase activity

Details: 
Catalysis of the reaction: (1/2)-unsubstituted naphthalenoid-(2/1)-sulfonate + 2 H+ + 2 e- + O2 = 1,2-dihydroxynaphthalene derivative + HSO3(-). Substrates include naphthalene-1,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate), naphthalene-1-sulfonate (forms 1,2-dihydroxynaphthalene), naphthalene-2,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate) and naphthalene-2-sulfonate (forms 1,2-dihydroxynaphthalene).
GO Category: 
MF

GO:0042389

omega-3 fatty acid desaturase activity

Details: 
Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain.
GO Category: 
MF

Add comment

Log in to post comments