bd2088 (bd2088) rbcLThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd2088	bd_26x41	(bd2088) rbcL	54858	57460	+	rbcL

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0069

Most Highly Correlated Transcripts

ThpsCp007 (psbX) photosystem II protein X 0.9937	ThpsCt001 (trnM(cau)) 0.9726	bd1037 (bd1037) Ycf66_N 0.9672	ThpsCp006 (ycf66) hypothetical protein 0.9672	264714 Chloroa_b-bind superfamily 0.9664	bd1304 (bd1304) Ycf4 0.9634
ThpsCp066 (ycf4) photosystem I assembly protein Ycf4 0.9634	bd1342 (bd1342) psaL 0.9626	ThpsCp068 (psaL) photosystem I subunit XI 0.9626	bd1039 (bd1039) psbV 0.9608

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RuBisCO_large_I		Ribulose bisphosphate carboxylase large chain, Form I; Ribulose bisphosphate carboxylase (Rubisco)...	cl08232	911.807	0	27 - 478	specific	173977
RuBisCO_large superfamily		Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase (Rubisco) plays an...	-	911.807	0	27 - 478	superfamily	263542
rbcL		ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit	-	982.655	0	1 - 480	multi-dom	176981

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	298342	Not available	Not available	ATCG00490.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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