23847 TraB superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23847 chr_8 TraB superfamily 1026364 1028215 + TraB superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444929 Thaps23847.1, Thaps23847.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0084
 0.43

Most Highly Correlated Transcripts

261885

RRM1_RBM34
0.8641

30871

HAM1
0.8562

22404

DEXDc superfamily
0.8381

22706

hypothetical protein
0.8316

5036

Josephin superfamily
0.8287

24878

COG0412
0.8259

4372

hypothetical protein
0.8241

37374

PseudoU_synth superfamily
0.8213

bd1807

(bd1807) RRS1 superfamily
0.8202

bd686

(bd686) Glyco_transf_22 superfamily
0.8191

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TraB superfamily TraB family; pAD1 is a hemolysin/bacteriocin plasmid originally identified in Enterococcus faecalis... - 91.6446 2.50E-20 173 - 483 superfamily 264523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48468 PHATRDRAFT_48468 233089 328612 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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