5036 Josephin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5036 chr_5 Josephin superfamily 221258 223266 + Josephin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447272 Thaps5036.2, Thaps5036.4, Thaps5036.3, Thaps5036.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0084
 0.43

Most Highly Correlated Transcripts

20686

RanBD_NUP50
0.8701

bd686

(bd686) Glyco_transf_22 superfamily
0.8665

8586

DUF563
0.8586

2791

DUF1649 superfamily
0.8569

9498

Glyco_hydro_72 superfamily
0.8481

4350

hypothetical protein
0.8473

21554

hypothetical protein
0.8464

22706

hypothetical protein
0.8459

23101

hypothetical protein
0.8435

268872

SET
0.842

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Josephin superfamily Josephin; Josephin. - 151.373 1.55E-43 100 - 259 superfamily 251085
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 59.1321 3.73E-11 373 - 437 superfamily 260222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47158 PHATRDRAFT_47158 212160 65478 462657 Cre11.g475450.t1.2 AT3G54130.1 352438

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

Not available -

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